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We develop a computational algorithm based on a diffuse interface approach to study the design of bioartificial organ scaffold architectures. These scaffolds, composed of poroelastic hydrogels housing transplanted cells, are linked to the patient’s blood circulation via an anastomosis graft. Before entering the scaffold, the blood flow passes through a filter, and the resulting filtered blood plasma transports oxygen and nutrients to sustain the viability of transplanted cells over the long term. A key issue in maintaining cell viability is the design of ultrafiltrate channels within the hydrogel scaffold to facilitate advection-enhanced oxygen supply ensuring oxygen levels remain above a critical threshold to prevent hypoxia. In this manuscript, we develop a computational algorithm to analyze the plasma flow and oxygen concentration within hydrogels featuring various channel geometries. Our objective is to identify the optimal hydrogel channel architecture that sustains oxygen concentration throughout the scaffold above the critical hypoxic threshold. The computational algorithm we introduce here employs a diffuse interface approach to solve a multi-physics problem. The corresponding model couples the time-dependent Stokes equations, governing blood plasma flow through the channel network, with the time-dependent Biot equations, characterizing Darcy velocity, pressure, and displacement within the poroelastic hydrogel containing the transplanted cells. Subsequently, the calculated plasma velocity is utilized to determine oxygen concentration within the scaffold using a diffuse interface advection-reaction-diffusion model. Our investigation yields a scaffold architecture featuring a hexagonal network geometry that meets the desired oxygen concentration criteria. Unlike classical sharp interface approaches, the diffuse interface approach we employ is particularly adept at addressing problems with intricate interface geometries, such as those encountered in bioartificial organ scaffold design. This study is significant because recent developments in hydrogel fabrication make it now possible to control hydrogel rheology and utilize computational results to generate optimized scaffold architectures. 

In this paper we introduce a constructive approach to study well-posedness of solutions to stochastic uid-structure interaction with stochastic noise. We focus on a benchmark problem in stochastic uidstructure interaction, and prove the existence of a unique weak solution in the probabilistically strong sense. The benchmark problem consists of the 2D time-dependent Stokes equations describing the ow of an incompressible, viscous uid interacting with a linearly elastic membrane modeled by the 1D linear wave equation. The membrane is stochastically forced by the time-dependent white noise. The uid and the structure are linearly coupled. The constructive existence proof is based on a time-discretization via an operator splitting approach. This introduces a sequence of approximate solutions, which are random variables. We show the existence of a subsequence of approximate solutions which converges, almost surely, to a weak solution in the probabilistically strong sense. The proof is based on uniform energy estimates in terms of the expectation of the energy norms, which are the backbone for a weak compactness argument giving rise to a weakly convergent subsequence of probability measures associated with the approximate solutions. Probabilistic techniques based on the Skorohod representation theorem and the Gyongy-Krylov lemma are then employed to obtain almost sure convergence of a subsequence of the random approximate solutions to a weak solution in the probabilistically strong sense. The result shows that the deterministic benchmark FSI model is robust to stochastic noise, even in the presence of rough white noise in time. To the best of our knowledge, this is the  rst well-posedness result for stochastic uid-structure interaction. 

We develop a novel mathematical and computational framework for geometric optimization of mesh-like devices such as stents, based on modeling mesh-like structures as networks of one-dimensional curved rods. To simplify calculations, the curved rods are approximated by piecewise straight rods. Constrained optimization problems for different cost functionals are stated and mathematically analyzed. The cost functionals considered include: (1) stents' compliance, (2) norm of displacement, (3) norm of contact moment (which is related to fatigue), and (4) multicriteria optimization in which stents are optimized to achieve maximal radial stiffness and minimal bending rigidity. The optimization parameters are stent's vertices, namely, the location of points where the stent struts meet. Existence of solutions to the mathematically posed optimization problems is obtained, and a numerical method based on the gradient descent algorithm is proposed to find the solutions. Three representative stents' geometries are numerically analyzed to show that the optimization algorithms provide tangible solutions. The stent geometries considered are those of Palmaz type stents, single zig-zag stent rings, and Express type stents. Interesting findings are obtained, including several new stent designs. Several optimized stents are presented, including an optimized Palmaz stent with a reduction in contact moment of 30%, and optimized Express and Palmaz stents with a reduction in compliance by more than 70%. 

We present a multi-scale mathematical model and a novel numerical solver to study blood plasma flow and oxygen concentration in a prototype model of an implantable Bioartificial Pancreas (iBAP) that operates under arteriovenous pressure differential without the need for immunosuppressive therapy. The iBAP design consists of a poroelastic cell scaffold containing the healthy transplanted cells, encapsulated between two semi-permeable nano-pore size membranes to prevent the patient’s own immune cells from attacking the transplant. The device is connected to the patient’s vascular system via an anastomosis graft bringing oxygen and nutrients to the transplanted cells of which oxygen is the limiting factor for long-term viability. Mathematically, we propose a (nolinear) fluid–poroelastic structure interaction model to describe the flow of blood plasma through the scaffold containing the cells, and a set of (nonlinear) advection–reaction–diffusion equations defined on moving domains to study oxygen supply to the cells. These macro-scale models are solved using finite element method based solvers. One of the novelties of this work is the design of a novel second-order accurate fluid–poroelastic structure interaction solver, for which we prove that it is unconditionally stable. At the micro/nano-scale, Smoothed Particle Hydrodynamics (SPH) simulations are used to capture the micro/nano-structure (architecture) of cell scaffolds and obtain macro-scale parameters, such as hydraulic conductivity/permeability, from the micro-scale scaffold-specific architecture. To avoid expensive micro-scale simulations based on SPH simulations for every new scaffold architecture, we use Encoder–Decoder Convolution Neural Networks. Based on our numerical simulations, we propose improvements in the current prototype design. For example, we show that highly elastic scaffolds have a higher capacity for oxygen transfer, which is an important finding considering that scaffold elasticity can be controlled during their fabrication, and that elastic scaffolds improve cell viability. The mathematical and computational approaches developed in this work provide a benchmark tool for computational analysis of not only iBAP, but also, more generally, of cell encapsulation strategies used in the design of devices for cell therapy and bio-artificial organs.